PROTEIN ANALYSIS: QUARTERNARY STRUCTURE
Sunday, March 15, 2015
Friday, March 13, 2015
LIGANDS, WATER AND METAL
LIGAND
Cofactor
PROTEIN ANALYSIS: TERTIARY STRUCTURE
PERCENTAGE OF POLAR AND NONPOLAR
POLAR
|
%
|
NONPOLAR
|
%
|
C
|
1.71
|
A
|
6.43
|
D
|
7.00
|
F
|
4.00
|
E
|
8.57
|
G
|
6.57
|
H
|
4.00
|
I
|
4.14
|
K
|
8.71
|
L
|
11.86
|
N
|
4.14
|
M
|
1.71
|
Q
|
3.57
|
Q
|
3.57
|
R
|
5.00
|
P
|
2.71
|
S
|
5.29
|
V
|
6.43
|
T
|
4.00
|
W
|
1.00
|
Y
|
2.43
| ||
TOTAL:
|
54.42
|
TOTAL:
|
48.42
|
PROTEIN ANALYSIS:SECONDARY STRUCTURE
The secondary structure of 2-5A Dependent
Ribonuclease showing the helix and beta structure. There are 39 helix coils
(color) and there are 3-5-3 (color) beta coils.
NUMBER OF ALPHA AND BETA
Alpha=
Beta=
§
Helix
HELIX 1 1
HIS C 27 ASN C
35 1 9
HELIX 2 2
ASP C 37 GLY C
48 1 12
HELIX 3 3 THR C
61 MET C 69
1
9
HELIX 4 4 ARG C
71 HIS C 81
1
11
HELIX 5 5 THR C
94 GLY C 103
1
10
HELIX 6 6 SER C
104 SER C 113
1 10
HELIX 7 7 THR C
127 TYR C 135
1
9
HELIX 8 8 LYS C
137 ARG C 147
1 11
HELIX 9 9 LYS C
158 LEU C 164
1
7
HELIX 10 10 THR C
170 GLY C 179 1 10
HELIX 11 11 HIS C
180 GLU C 190
1 11
HELIX 12 12 ASN C
204 SER C 212
1 9
HELIX 13 13 ASP C
217 HIS C 228
1 12
HELIX 14 14 THR C
241 LYS C 249
1 9
HELIX 15 15
HIS C 251 LEU C
259 1 9
HELIX 16 16 THR C
275 LEU C 283
1 9
HELIX 17 17 LEU C
285 ARG C 295
1 11
HELIX 18 18 ASP C
303 ASN C 311
1
9
HELIX 19 19 ASP C
313 HIS C 323
1
11
HELIX 20 20 GLY C
344 ILE C 353
1 10
HELIX 21 21 SER C
398 SER C 410
1 13
HELIX 22 22 LEU C
441 ASP C 452
1
12
HELIX 23 23 ASP C
458 SER C 478
1
21
HELIX 24 24 GLN C
487 GLN C 489
5
3
HELIX 25 25 ASP C
513 LYS C 533
1
21
HELIX 26 26 SER C
538 LYS C 543
1
6
HELIX 27 27 GLU C
548 LEU C 553
1 6
HELIX 28 28 ASP C
556 HIS C 568
1
13
HELIX 29 29 SER C
578 TRP C 587
5
10
HELIX 30 30 THR C
588 GLY C 600
1
13
HELIX 31 31 GLU C
602 THR C 607
1
6
HELIX 32 32 SER C
612 LEU C 618
1
7
HELIX 33 33 LYS C
631 ILE C 636
1 6
HELIX 34 34 GLU C
638 LYS C 646
1
9
HELIX 35 35 PHE C
647 GLU C 649
5
3
HELIX 36 36 THR C
658 ILE C 673
1 16
HELIX 37 37 LYS C
679 GLY C 686
1
8
HELIX 38 38 ASP C
687 PHE C 696
1
10
HELIX 39 39 ASP C
698 GLN C 708
1 11
§
SHEET
SHEET 1 A 3 LYS C 362 PHE C 363
0
SHEET 2 A 3 GLY C 377 PHE C 383 -1
O PHE C 383 N LYS
C 362
SHEET 3 A 3 LYS C 370 THR C 374 -1
N ALA C 372 O ILE
C 379
SHEET 1 B 5 LYS C 362 PHE C 363
0
SHEET 2 B 5 GLY C 377 PHE C 383 -1
O PHE C 383 N LYS
C 362
SHEET 3 B 5 GLU C 388 CYS C 395 -1
O VAL C 391 N TYR
C 380
SHEET 4 B 5 HIS C 429 THR C 435 -1
O VAL C 434 N ALA
C 390
SHEET 5 B 5 PHE C 420 SER C 425 -1
N GLY C 422 O CYS
C 433
SHEET 1 C 3 GLN C 439 THR C 440
0
SHEET 2 C 3 ILE C 491 ILE C 493 -1
O ILE C 493 N GLN
C 439
SHEET
3 C 3 ALA C 499 LEU C 501 -1
O HIS C 500 N LEU
C 492
RESIDUE OF ALPHA AND BETA HELIX
SHEET
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